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With this background information about color, then we can rephrase the question to the following one: what is the smallest amount of a substance that can still absorb light or emit light? The answer to this is a single atom, or ion, or molecule, depending on how the color is generated. For example, burning a single sodium ion would also produce yellowish light just as burning a chunk of table salt. The size of a single atom or ion can be as few as one angstrom (one angstrom is 0.1 nm) in diameter, while a single molecule can be made up of several to millions of atoms.
On the other hand, by rephrasing the question, we assume that our eyes can detect light emitted from any amount of substance, which is certainly not true (I wish I could have that kind of eyes, then I would have vision even better than Superman's). In reality, the amount of light produced from a single atom or a single molecule is too weak to be seen by our eyes. But scientist can use specialized equipment to detect light emitted from a single molecule in some cases. For example, some scientists are using "single-molecule fluorescence microscopy" to study interesting molecules, such as proteins and DNA.
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